{"name":"vessel-express-napari","display_name":"vessel-express-napari","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"vessel-express-napari.ParameterTuning","title":"ParameterTuning","python_name":"vessel_express._dock_widget:ParameterTuning","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"vessel-express-napari.Evaluation","title":"Evaluation","python_name":"vessel_express._dock_widget:Evaluation","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":[{"command":"vessel-express-napari.napari_get_reader","filename_patterns":["*"],"accepts_directories":true}],"writers":null,"widgets":[{"command":"vessel-express-napari.ParameterTuning","display_name":"ParameterTuning","autogenerate":false},{"command":"vessel-express-napari.Evaluation","display_name":"Evaluation","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"vessel-express-napari","version":"0.0.9","dynamic":null,"platform":null,"supported_platform":null,"summary":"A simple plugin for 3D vessel segmentation","description":"# vessel-express-napari\n\n[![License](https://img.shields.io/pypi/l/vessel-express-napari.svg?color=green)](https://github.com/MMV-Lab/vessel-express-napari/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/vessel-express-napari.svg?color=green)](https://pypi.org/project/vessel-express-napari/)\n[![Python Version](https://img.shields.io/pypi/pyversions/vessel-express-napari.svg?color=green)](https://python.org)\n[![tests](https://github.com/MMV-Lab/vessel-express-napari/workflows/tests/badge.svg)](https://github.com/MMV-Lab/vessel-express-napari/actions)\n[![codecov](https://codecov.io/gh/MMV-Lab/vessel-express-napari/branch/main/graph/badge.svg?token=mJPpDiioxu)](https://codecov.io/gh/MMV-Lab/vessel-express-napari)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/vessel-express-napari)](https://www.napari-hub.org/plugins/vessel-express-napari)\n\nA simple plugin for 3D vessel segmentation of LSFM images\n\nThis [napari] plugin can be used to optimize the segmentation parameters for the [main VesselExpress software platform](https://github.com/RUB-Bioinf/VesselExpress).\n\n----------------------------------\n\n\n## Installation\n\nThe easiest way to install the plugin is to open napari, go to Plugins, then Install/Uninstall plugins. You will be able to find the plugin by name \"vessel-express-napari\". \n\nOr, you can install `vessel-express-napari` via [pip]:\n\n    pip install vessel-express-napari\n\n\nTo install latest development version :\n\n    pip install git+https://github.com/MMV-Lab/vessel-express-napari.git\n\n\n## Documentation\n\nWe provide a [quick start guide] to explain the important pieces of this plugin. Suggestions and feature quests are very welcomed. \n\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [BSD-3] license,\n\"vessel-express-napari\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[file an issue]: https://github.com/MMV-Lab/vessel-express-napari/issues\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n[quick start guide]: https://github.com/MMV-Lab/vessel-express-napari/blob/main/quick_start.md\n\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/MMV-Lab/vessel-express-napari","download_url":null,"author":"Lennart Kowitz","author_email":"lennart.kowitz@isas.de","maintainer":null,"maintainer_email":null,"license":"BSD-3-Clause","classifier":["Development Status :: 2 - Pre-Alpha","Intended Audience :: Developers","Framework :: napari","Topic :: Software Development :: Testing","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3.7","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Operating System :: OS Independent","License :: OSI Approved :: BSD License"],"requires_dist":["napari-plugin-engine (>=0.1.4)","numpy","itk","scikit-image","aicssegmentation"],"requires_python":">=3.7","requires_external":null,"project_url":["Bug Tracker, https://github.com/MMV-Lab/vessel-express-napari/issues","Documentation, https://github.com/MMV-Lab/vessel-express-napari#README.md","Source Code, https://github.com/MMV-Lab/vessel-express-napari","User Support, https://github.com/MMV-Lab/vessel-express-napari/issues"],"provides_extra":null,"provides_dist":null,"obsoletes_dist":null},"npe1_shim":true}