{"name":"palmari","display_name":"Palmari","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"palmari.make_qwidget","title":"Analyze file...","python_name":"palmari._widget:PalmariWidget","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"palmari.run_pipeline","title":"Run pipeline on folder...","python_name":"palmari._runner:PipelineRunner","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"palmari.make_qwidget","display_name":"Run Palmari on file...","autogenerate":false},{"command":"palmari.run_pipeline","display_name":"Run Palmari on folder...","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"palmari","version":"0.3.0","dynamic":null,"platform":null,"supported_platform":null,"summary":"Palmari provides a plugin to analyze PALM movies, as well as microscope recordings of other SMLM-based SPT modalities. Set up your pipeline on one file, run it on a folder !","description":"# Palmari\n\n[![Documentation Status](https://readthedocs.org/projects/palmari/badge/?version=latest)](https://palmari.readthedocs.io/en/latest/?badge=latest)\n[![Python Version](https://img.shields.io/pypi/pyversions/palmari.svg?color=green)](https://python.org)\n[![tests](https://github.com/hippover/palmari/workflows/tests/badge.svg)](https://github.com/hippover/palmari/actions)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/palmari)](https://napari-hub.org/plugins/palmari)\n[![License](https://img.shields.io/pypi/l/palmari.svg?color=green)](https://github.com/hippover/palmari/raw/main/LICENSE)\n\nA processing pipeline for PALM movies analysis (pre-processing, localization, drift correction, tracking).\n\nCheck out the [documentation] to get started.\n\n![napari_plugin](https://github.com/hippover/palmari/raw/main/docs/images/plugin_steps.png \"Fine-tune your pipelines on a movie, run it on a batch easily !\")\n\n----------------------------------\n\nThis [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.\n\n<!--\nDon't miss the full getting started guide to set up your new package:\nhttps://github.com/napari/cookiecutter-napari-plugin#getting-started\n\nand review the napari docs for plugin developers:\nhttps://napari.org/plugins/stable/index.html\n-->\n\n## Installation\n\nYou can install `palmari` via [pip]:\n\n    pip install palmari\n\n\n\nTo install latest development version :\n\n    pip install git+https://github.com/hippover/palmari.git\n\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [CeCILL] license.\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[file an issue]: https://github.com/hippover/palmari/issues\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n[CeCILL]: http://cecill.info/index.en.html\n[documentation]: https://palmari.readthedocs.io/en/latest/\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/hippover/palmari","download_url":null,"author":"Hippolyte Verdier","author_email":"hverdier@pasteur.fr","maintainer":null,"maintainer_email":null,"license":"\"CeCILL\"","classifier":["Development Status :: 4 - Beta","Intended Audience :: Science/Research","Framework :: napari","Environment :: Plugins","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Topic :: Scientific/Engineering :: Image Processing","Operating System :: OS Independent","License :: OSI Approved :: CEA CNRS Inria Logiciel Libre License, version 2.1 (CeCILL-2.1)"],"requires_dist":["click","dask (>=2022.1.0)","dask-image (>=2021.12.0)","imageio-ffmpeg","magicgui (>=0.5.0)","matplotlib (>=3.5)","munkres","napari","napari-aicsimageio","numpy","pandas","pyyaml","qtpy","scikit-image (>=0.18.3)","scikit-learn","toml","tqdm","trackpy (>=0.5.0)","tox ; extra == 'testing'","PyQt5 ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'","pytest-qt ; extra == 'testing'"],"requires_python":">=3.8","requires_external":null,"project_url":["Bug Tracker, https://github.com/hippover/palmari/issues","Documentation, https://palmari.readthedocs.io/en/latest/","Source Code, https://github.com/hippover/palmari","User Support, https://github.com/hippover/palmari/issues"],"provides_extra":["testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}