{"name":"napari-wsireg","display_name":"napari-wsireg","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-wsireg.make_qwidget","title":"Open wsireg for 2D image registration","python_name":"napari_wsireg._widget:WsiReg2DMain","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"napari-wsireg.make_qwidget","display_name":"wsireg2D Main","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-wsireg","version":"0.1.2","dynamic":null,"platform":null,"supported_platform":null,"summary":"plugin to perform whole slide image registration with wsireg","description":"# napari-wsireg\n\n![Alt text](https://github.com/NHPatterson/napari-wsireg/blob/main/src/napari_wsireg/gui/resources/wsireg-logo-light.svg?raw=true \"wsireg\")\n\n[//]: # ([![License](https://img.shields.io/pypi/l/napari-wsireg.svg?color=green)](https://github.com/nhpatterson/napari-wsireg/raw/main/LICENSE))\n\n[//]: # ([![PyPI](https://img.shields.io/pypi/v/napari-wsireg.svg?color=green)](https://pypi.org/project/napari-wsireg))\n\n[//]: # ([![Python Version](https://img.shields.io/pypi/pyversions/napari-wsireg.svg?color=green)](https://python.org))\n\n[//]: # ([![tests](https://github.com/nhpatterson/napari-wsireg/workflows/tests/badge.svg)](https://github.com/nhpatterson/napari-wsireg/actions))\n\n[//]: # ([![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-wsireg)](https://napari-hub.org/plugins/napari-wsireg))\n\n\nPlugin to perform whole slide image registration based on wsireg.\n\nPlease see [wsireg](https://github.com/nhpatterson/wsireg) for more info image formats, features and how registration works.\n\n\n## Usage\n\nAdd images from napari layers or from file and set up \"registration paths\" between them. OME-TIFF is best supported format.\n\n### Constructed registration graph in action\n\n![Alt Text](assets/graph_in_action.gif)\n\n\n_Solid arrows_: direct registration between two images.\n\n_Dashed arrows_: indriect registration paths.\n\n## Installation\n\nYou can install `napari-wsireg` via [pip]:\n\n    pip install napari-wsireg\n\n\n\nTo install latest development version :\n\n    pip install git+https://github.com/nhpatterson/napari-wsireg.git\n\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [BSD-3] license,\n\"napari-wsireg\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[file an issue]: https://github.com/nhpatterson/napari-wsireg/issues\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/nhpatterson/napari-wsireg","download_url":null,"author":"Nathan Heath Patterson","author_email":"heath.patterson@vanderbilt.edu","maintainer":null,"maintainer_email":null,"license":"BSD-3-Clause","classifier":["Development Status :: 4 - Beta","Framework :: napari","Intended Audience :: Developers","License :: OSI Approved :: BSD License","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Topic :: Software Development :: Testing"],"requires_dist":["wsireg (>=0.3.6)","SimpleITK","czifile","dask","imagecodecs","napari","numpy","ome-types","pint","qtpy","tifffile","zarr (>=2.10.3)","napari-geojson","networkx","matplotlib"],"requires_python":">=3.8","requires_external":null,"project_url":["Bug Tracker, https://github.com/nhpatterson/napari-wsireg/issues","Documentation, https://github.com/nhpatterson/napari-wsireg#README.md","Source Code, https://github.com/nhpatterson/napari-wsireg","User Support, https://github.com/nhpatterson/napari-wsireg/issues"],"provides_extra":null,"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}