{"name":"napari-tissuumaps","display_name":"Napari TissUUmaps","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-tissuumaps.write_layers","title":"Export layers as a TissUUmaps project","python_name":"napari_tissuumaps._writer:write_layers","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":[{"command":"napari-tissuumaps.write_layers","layer_types":["image*","labels*","points*","shapes*"],"filename_extensions":[".tmap"],"display_name":""}],"widgets":null,"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-tissuumaps","version":"1.1.2","dynamic":null,"platform":null,"supported_platform":null,"summary":"A plugin to export Napari projects to TissUUmaps.","description":"# 🏝 napari-tissuumaps 🧫\n\n[![License MIT](https://img.shields.io/pypi/l/napari-tissuumaps.svg?color=green)](https://github.com/npielawski/napari-tissuumaps/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-tissuumaps.svg?color=green)](https://pypi.org/project/napari-tissuumaps)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-tissuumaps.svg?color=green)](https://python.org)\n[![tests](https://github.com/npielawski/napari-tissuumaps/workflows/tests/badge.svg)](https://github.com/npielawski/napari-tissuumaps/actions)\n[![codecov](https://codecov.io/gh/npielawski/napari-tissuumaps/branch/main/graph/badge.svg)](https://codecov.io/gh/npielawski/napari-tissuumaps)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-tissuumaps)](https://napari-hub.org/plugins/napari-tissuumaps)\n\nA plugin to export Napari projects to [TissUUmaps](https://tissuumaps.research.it.uu.se/).\n\n----------------------------------\n\nThis plugins adds a new writer to [Napari] to export projects to [TissUUmaps](https://github.com/TissUUmaps/TissUUmaps). Exported projects can then be open on the browser or on a standalone GUI with [TissUUmaps](https://github.com/TissUUmaps/TissUUmaps). More information and demonstrations are available on the [TissUUmaps webpage](https://tissuumaps.research.it.uu.se/).\n\n<!--\nDon't miss the full getting started guide to set up your new package:\nhttps://github.com/napari/cookiecutter-napari-plugin#getting-started\n\nand review the napari docs for plugin developers:\nhttps://napari.org/stable/plugins/index.html\n-->\n\n## 🚀 Features\n\n<p align=\"center\">\n  <img src=\"images/screenshot.jpg\" alt=\"Demonstration of a project exported from Napari to TissUUmaps.\" width=\"500\" />\n</p>\n\nThe plugin now supports:\n\n* Exporting images\n* Exporting labels\n* Exporting points\n* Exporting shapes, including:\n    * Polygons\n    * Rectangles\n    * Lines\n    * Paths\n    * Ellipses\n\nThe plugin exports the right color for the points, shapes and labels and also saves the visibility/opacity of each layers. The shapes are exported in the GeoJSON format, the points in CSV files, and images as TIFFs.\n\n## 📺 Installation\n\nYou can install `napari-tissuumaps` via [pip]:\n\n    pip install napari-tissuumaps\n\nYou can also install `napari-tissumaps` via [napari]:\n\nIn Napari, access the menubar, Plugins > Install/Uninstall Plugins.\nSearch for napari-tissuumaps in the list and choose install, or type\n`napari-tissuumaps` in the \"install by name/url, or drop file...\" text area and choose\ninstall.\n\n## ⛏ Usage\n\nTo export a project for TissUUmaps, access the menubar, File > Save All Layers... and\ntype in a filename. Choose the `.tmap` extension in the dropdown and click on the Save\nbutton, It will create a folder containing all the necessary files for TissUUmaps.\n\n## 👩‍💻 Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## ⚖️ License\n\nDistributed under the terms of the [MIT] license,\n\"napari-tissuumaps\" is free and open source software\n\n## 🚒 Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":null,"download_url":null,"author":"Nicolas Pielawski","author_email":"nicolas@pielawski.fr","maintainer":null,"maintainer_email":null,"license":"MIT","classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Developers","License :: OSI Approved :: MIT License","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Topic :: Scientific/Engineering :: Image Processing"],"requires_dist":["numpy","napari ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'","tox ; extra == 'testing'"],"requires_python":">=3.8","requires_external":null,"project_url":null,"provides_extra":["testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}