{"name":"napari-segment-anything","display_name":"Segment Anything","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-segment-anything.samwidget","title":"Segment Anything","python_name":"napari_segment_anything._widget:SAMWidget","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"napari-segment-anything.samwidget","display_name":"Segment Anything","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-segment-anything","version":"0.1.4","dynamic":null,"platform":null,"supported_platform":null,"summary":"Napari plugin of Segment Anything Model (SAM)","description":"# napari-segment-anything\n\n[![License Apache Software License 2.0](https://img.shields.io/pypi/l/napari-segment-anything.svg?color=green)](https://github.com/jookuma/napari-segment-anything/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-segment-anything.svg?color=green)](https://pypi.org/project/napari-segment-anything)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-segment-anything.svg?color=green)](https://python.org)\n[![tests](https://github.com/jookuma/napari-segment-anything/workflows/tests/badge.svg)](https://github.com/jookuma/napari-segment-anything/actions)\n[![codecov](https://codecov.io/gh/jookuma/napari-segment-anything/branch/main/graph/badge.svg)](https://codecov.io/gh/jookuma/napari-segment-anything)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-segment-anything)](https://napari-hub.org/plugins/napari-segment-anything)\n\nNapari plugin of [Segment Anything Model (SAM)](https://github.com/facebookresearch/segment-anything)\n\nDownload the network weights [here](https://github.com/facebookresearch/segment-anything#model-checkpoints)\n\n\nhttps://user-images.githubusercontent.com/21022743/230456433-2fa7bc40-a735-4d73-8d87-ecf776bbe2be.mp4\n\n\n----------------------------------\n\nThis [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.\n\n## Installation\n\nYou can install `napari-segment-anything` via [pip]:\n\n```bash\npip install napari-segment-anything\n```\n\nWe recommend installing the latest development version because this package is being developed:\n\n```bash\npip install git+https://github.com/jookuma/napari-segment-anything.git\n```\n\n**IMPORTANT**: `napari` won't work if you don't have `pyqt5` or `pyside2` installed.\n\n## Instructions\n\n### Opening napari-segment-anything\n\nThis software is napari plugin, so once you have napari installed you can open it using the command line:\n\n```bash\nnapari <your image path> -w napari-segment-anything 'Segment Anything'\n```\n\nI noticed that sometimes napari fails to load the plugin widget from the command line, go to step 2 from below to load it.\n\nIf you prefer the user interface you need to:\n\n1) Drag and drop your image into napari to load it;\n2) Go to the \"Plugins\" file menu in the upper right corner and select the \"Segment Anything\" plugin.\n3) Follow the instructions below for usage.\n\n**IMPORTANT**: If you get an error make sure you have `pyqt5` or `pyside2` installed.\n\n### Usage\n\n- Interactions are done on the \"SAM points\" and \"SAM box\" layers using the existing functionalities of napari. Only rectangle shapes trigger the network prediction.\n- For points supervision, left clicks are positive cues (object) and right clicks are negative (background).\n- Press the \"Confirm Annot.\" button (or the \"C\" key) to propagate the current segmentation mask to the label image.\n- Use the napari labels layer features to delete or edit already confirmed labels.\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [Apache Software License 2.0] license,\n\"napari-segment-anything\" is a free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[file an issue]: https://github.com/jookuma/napari-segment-anything/issues\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/jookuma/napari-segment-anything","download_url":null,"author":"Jordao Bragantini","author_email":"jordao.bragantini@czbiohub.org","maintainer":null,"maintainer_email":null,"license":"Apache-2.0","classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Developers","License :: OSI Approved :: Apache Software License","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Topic :: Scientific/Engineering :: Image Processing"],"requires_dist":["numpy","torch","torchvision","segment-anything","qtpy","magicgui","napari","tox ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'","pytest-qt ; extra == 'testing'","pyqt5 ; extra == 'testing'"],"requires_python":">=3.8","requires_external":null,"project_url":["Bug Tracker, https://github.com/jookuma/napari-segment-anything/issues","Documentation, https://github.com/jookuma/napari-segment-anything#README.md","Source Code, https://github.com/jookuma/napari-segment-anything","User Support, https://github.com/jookuma/napari-segment-anything/issues"],"provides_extra":["testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}