{"name":"napari-seedseg","display_name":"SeedSeg Segmentation","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-seedseg.make_qwidget","title":"SeedSeg","python_name":"napari_seedseg._widget:SeedSegWidget","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"napari-seedseg.make_qwidget","display_name":"SeedSeg","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-seedseg","version":"0.0.2","dynamic":null,"platform":null,"supported_platform":null,"summary":"A simple plugin for segmentation","description":"# napari-seedseg\n\n[![License BSD-3](https://img.shields.io/pypi/l/napari-seedseg.svg?color=green)](https://github.com/rezaakb/napari-seedseg/tree/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-seedseg.svg?color=green)](https://pypi.org/project/napari-seedseg)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-seedseg.svg?color=green)](https://python.org)\n[![tests](https://github.com/rezaakb/napari-seedseg/workflows/tests/badge.svg)](https://github.com/rezaakb/napari-seedseg/actions)\n[![codecov](https://codecov.io/gh/rezaakb/napari-seedseg/branch/main/graph/badge.svg)](https://codecov.io/gh/rezaakb/napari-seedseg)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-seedseg)](https://napari-hub.org/plugins/napari-seedseg)\n\nA simple plugin for 2D medical image segmentation. In this project, we are trying to use Flood method for segmentation. \nFlood segmentation, also known as flood fill or region growing, is an image segmentation technique that starts from a seed point and expands to neighboring pixels with similar properties (e.g., intensity, color). In our project, you only can segment one label at the time. Below is a description of the repository's structure and the purpose of each file:\n\n    .\n    ├── setup.cfg              # package metadata\n    ├── pyproject.toml         # use setuptools\n    ├── src/napari_seedseg     \n    │   ├── napari.yaml        # Load and stress tests\n    │   ├── __init.py__        # Python package metadata files\n    │   ├── _widget.py         # Widget contributions\n    │   ├── _layers.py         # Layers contributions\n    │   └── _method.py         # Methods contributions\n    └── ...\n\n----------------------------------\n\nThis [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.\n\n<!--\nDon't miss the full getting started guide to set up your new package:\nhttps://github.com/napari/cookiecutter-napari-plugin#getting-started\n\nand review the napari docs for plugin developers:\nhttps://napari.org/stable/plugins/index.html\n-->\n\n## Installation\n\nYou can install `napari-seedseg` via [pip]:\n\n    pip install napari-seedseg\n\n\n\nTo install latest development version :\n\n    pip install git+https://github.com/rezaakb/napari-seedseg.git\n\n\n## Packages\nIn this project we have used these packages:\n\n    numpy\n    magicgui\n    qtpy\n    opencv-python-headless\n    scikit-image>=0.19.3\n\n\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [BSD-3] license,\n\"napari-seedseg\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[file an issue]: https://github.com/rezaakb/napari-seedseg/issues\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":"example project","home_page":"https://github.com/rezaakb/napari-seedseg","download_url":null,"author":"Reza Akbarian Bafghi","author_email":"reza.akb98@gmail.com","maintainer":null,"maintainer_email":null,"license":"BSD-3","classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Developers","License :: OSI Approved :: BSD License","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Topic :: Scientific/Engineering :: Image Processing"],"requires_dist":["napari","numpy","magicgui","qtpy","opencv-python-headless","scikit-image >=0.19.3","tox ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'","pytest-qt ; extra == 'testing'","napari ; extra == 'testing'","pyqt5 ; extra == 'testing'"],"requires_python":">=3.8","requires_external":null,"project_url":["Bug Tracker, https://github.com/rezaakb/napari-seedseg/issues","Documentation, https://github.com/rezaakb/napari-seedseg#README.md","Source Code, https://github.com/rezaakb/napari-seedseg","User Support, https://github.com/rezaakb/napari-seedseg/issues"],"provides_extra":["testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}