{"name":"napari-plot-profile","display_name":"napari-plot-profile","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-plot-profile.PlotProfile","title":"PlotProfile","python_name":"napari_plot_profile._dock_widget:PlotProfile","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-plot-profile.topographical_view","title":"topographical_view","python_name":"napari_plot_profile._dock_widget:topographical_view","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"napari-plot-profile.PlotProfile","display_name":"PlotProfile","autogenerate":false},{"command":"napari-plot-profile.topographical_view","display_name":"topographical_view","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-plot-profile","version":"0.2.2","dynamic":null,"platform":null,"supported_platform":null,"summary":"Plot intensity along a line and create topographical views in napari","description":"# napari-plot-profile (npp)\n\n[![License](https://img.shields.io/pypi/l/napari-plot-profile.svg?color=green)](https://github.com/haesleinhuepf/napari-plot-profile/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-plot-profile.svg?color=green)](https://pypi.org/project/napari-plot-profile)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-plot-profile.svg?color=green)](https://python.org)\n[![tests](https://github.com/haesleinhuepf/napari-plot-profile/workflows/tests/badge.svg)](https://github.com/haesleinhuepf/napari-plot-profile/actions)\n[![codecov](https://codecov.io/gh/haesleinhuepf/napari-plot-profile/branch/master/graph/badge.svg)](https://codecov.io/gh/haesleinhuepf/napari-plot-profile)\n[![Development Status](https://img.shields.io/pypi/status/napari-plot-profile.svg)](https://en.wikipedia.org/wiki/Software_release_life_cycle#Alpha)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-plot-profile)](https://napari-hub.org/plugins/napari-plot-profile)\n\n## Plot a Line Profile\n\nPlot intensities along a line in [napari].\n\n![img.png](https://github.com/haesleinhuepf/napari-plot-profile/raw/main/docs/napari-plot-profile-screencast.gif)\n\n* Open some images in [napari].\n  \n* Add a shapes layer.\n\n![img.png](https://github.com/haesleinhuepf/napari-plot-profile/raw/main/docs/add_shapes_layer_screenshot.png)\n  \n* Activate the line drawing tool or the path tool and draw a line.\n\n![img.png](https://github.com/haesleinhuepf/napari-plot-profile/raw/main/docs/draw_line_tool_screenshot.png)\n  \n* After drawing a line, click on the menu Plugins > Measurements (Plot Profile)\n* If you modify the line, you may want to click the \"Refresh\" button to redraw the profile.\n\n![img.png](https://github.com/haesleinhuepf/napari-plot-profile/raw/main/docs/redraw_screenshot.png)\n\nTo see how these steps can be done programmatically from python, check out the [demo notebook](https://github.com/haesleinhuepf/napari-plot-profile/blob/main/docs/demo.ipynb)\n\n## Create a Topographical View\n\nCreate a 3D view of a 2D image by warping pixel intensities to heights. It can be displayed as a 3D image layer, a points cloud layer or a surface layer.\n\n![](https://github.com/haesleinhuepf/napari-plot-profile/raw/main/docs/topographical_view_screencast.gif)\n\nThis [napari] plugin was generated with [Cookiecutter] using with [@napari]'s [cookiecutter-napari-plugin] template.\n\n----------------------------------\n\n## Installation\n\nYou can install `napari-plot-profile` via [pip]:\n\n    pip install napari-plot-profile\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [BSD-3] license,\n\"napari-plot-profile\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please create a thread on [image.sc] along with a detailed description and tag [@haesleinhuepf].\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[file an issue]: https://github.com/haesleinhuepf/napari-plot-profile/issues\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n[image.sc]: https://image.sc\n[@haesleinhuepf]: https://twitter.com/haesleinhuepf\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/haesleinhuepf/napari-plot-profile","download_url":null,"author":"Robert Haase, Marcelo Leomil Zoccoler","author_email":"robert.haase@tu-dresden.de","maintainer":null,"maintainer_email":null,"license":"BSD-3-Clause","classifier":["Development Status :: 3 - Alpha","Intended Audience :: Science/Research","Framework :: napari","Topic :: Scientific/Engineering :: Image Processing","Topic :: Scientific/Engineering :: Information Analysis","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3.7","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Operating System :: OS Independent","License :: OSI Approved :: BSD License"],"requires_dist":["napari-plugin-engine (>=0.1.4)","numpy","pyqtgraph","napari","napari-tools-menu","napari-skimage-regionprops (>=0.2.4)","imageio (!=2.22.1)"],"requires_python":">=3.7","requires_external":null,"project_url":["Bug Tracker, https://github.com/haesleinhuepf/napari-plot-profile/issues","Documentation, https://github.com/haesleinhuepf/napari-plot-profile#README.md","Source Code, https://github.com/haesleinhuepf/napari-plot-profile","User Support, https://github.com/haesleinhuepf/napari-plot-profile/issues"],"provides_extra":null,"provides_dist":null,"obsoletes_dist":null},"npe1_shim":true}