{"name":"napari-live-flim","display_name":"Napari Live Flim","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-live-flim.open","title":"FLIM Viewer","python_name":"napari_live_flim:FlimViewer","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"napari-live-flim.open","display_name":"FLIM Viewer","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-live-flim","version":"0.1.1","dynamic":null,"platform":null,"supported_platform":null,"summary":"A plugin for real-time FLIM analysis","description":"# napari-live-flim\n\n[![License GNU GPL v3.0](https://img.shields.io/pypi/l/napari-live-flim.svg?color=green)](https://github.com/uw-loci/napari-live-flim/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-live-flim.svg?color=green)](https://pypi.org/project/napari-live-flim)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-live-flim.svg?color=green)](https://python.org)\n[![tests](https://github.com/uw-loci/napari-live-flim/workflows/tests/badge.svg)](https://github.com/uw-loci/napari-live-flim/actions)\n[![codecov](https://codecov.io/gh/uw-loci/napari-live-flim/branch/main/graph/badge.svg)](https://codecov.io/gh/uw-loci/napari-live-flim)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-live-flim)](https://napari-hub.org/plugins/napari-live-flim)\n\nA plugin for real-time FLIM analysis\n\n----------------------------------\n\nThis [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.\n\n<!--\nDon't miss the full getting started guide to set up your new package:\nhttps://github.com/napari/cookiecutter-napari-plugin#getting-started\n\nand review the napari docs for plugin developers:\nhttps://napari.org/plugins/index.html\n-->\n\n## Required dependencies\n\n- [OpenScan] TCSPC module and all dependencies.\n    - Verify FLIM electronics are compatible with OpenScan\n- Python and the [napari] package and all dependencies\n\nYou can install `napari` via [pip]:\n\n    pip install napari[all]\n\n## Installation\n\nYou can install `napari-live-flim` via [pip]:\n\n    pip install napari-live-flim\n\n## Usage\n\n1. In MicroManager, set a port number in the device property setting named `OpenScanFLIM-BH-TCSPC-SendFLIMHistogramsToUDPPort`\n2. In Napari, select **Plugins > FLIM Viewer (napari-live-flim)** to run the plugin. Enter the same port number to connect to OpenScan.\n3. Begin acquisition within MicroManager.\n4. Interact with the FLIM data in real-time within napari.\n    - Modify the FLIM Parameters and Display Filters settings as desired.\n    - Add selections to the Lifetime Image or Phasor Plot by clicking the relevant New Selection buttons.\n    - Manipulate the selections with the mouse cursor and modify the selection layer with the layer controls.\n    - Click the Snapshot button during acquisition to take a snapshot.\n    - Use the scroll bar under the Lifetime Image to recall a specific snapshot.\n5. Stop scanning within MicroManager to end acquisition.\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [GNU GPL v3.0] license,\n\"napari-live-flim\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n[file an issue]: https://github.com/uw-loci/napari-live-flim/issues\n[OpenScan]: https://github.com/openscan-lsm/OpenScan\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":null,"download_url":null,"author":"Kevin Tan","author_email":"kktangent@gmail.com","maintainer":null,"maintainer_email":null,"license":"GPL-3.0-only","classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Developers","License :: OSI Approved :: GNU General Public License v3 (GPLv3)","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Topic :: Software Development :: Testing"],"requires_dist":["dataclasses-json","flimlib","magicgui","matplotlib","numpy","qtpy","scipy","superqt","vispy","tox ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'","pytest-qt ; extra == 'testing'","napari ; extra == 'testing'","pyqt5 ; extra == 'testing'"],"requires_python":">=3.8","requires_external":null,"project_url":null,"provides_extra":["testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}