{"name":"napari-labels-overlap","display_name":"napari labels overlap","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-labels-overlap.labels_overlap","title":"labels_overlap","python_name":"napari_labels_overlap._dock_widget:labels_overlap","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"napari-labels-overlap.labels_overlap","display_name":"labels overlap","autogenerate":true}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-labels-overlap","version":"0.0.3","dynamic":null,"platform":null,"supported_platform":null,"summary":"create an overlap labels layer from two labels layers","description":"# napari-labels-overlap\n\n[![License](https://img.shields.io/pypi/l/napari-labels-overlap.svg?color=green)](https://github.com/chili-chiu/napari-labels-overlap/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-labels-overlap.svg?color=green)](https://pypi.org/project/napari-labels-overlap)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-labels-overlap.svg?color=green)](https://python.org)\n[![tests](https://github.com/chili-chiu/napari-labels-overlap/workflows/tests/badge.svg)](https://github.com/chili-chiu/napari-labels-overlap/actions)\n[![codecov](https://codecov.io/gh/chili-chiu/napari-labels-overlap/branch/main/graph/badge.svg)](https://codecov.io/gh/chili-chiu/napari-labels-overlap)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-labels-overlap)](https://napari-hub.org/plugins/napari-labels-overlap)\n\ncreate an overlap labels layer from two labels layers\n\n## Description\n\nThis plugin takes two labels layers (layerA, layerB) as inputs, and generate the overlapped regions as a binary labels layer.\nThree modes:<br>\n(1) A_OR_B: new layer = layerA OR layerB (union)<br>\n(2) A_AND_B: new layer = layerA AND layerB (intersection)<br>\n(3) A_OUTSIDE_B: new layer = layerA OUTSIDE layerB (complement)<br>\n\n[comment]: <need to update the gif>\n\n![labels_overlap](https://user-images.githubusercontent.com/89602983/144129087-9a88d55f-f1a0-4825-bd01-770909bfc64f.gif)\n\n## Applicaions\n- Object colocalization\n- Merge separately identified objects\n\n## Future work\n- Support N labels layers\n- Basic coloc stats (% volume overlap)\n- Output Labels with distinct IDs and links to original label IDs\n\n## Release log\n- 0.0.2<br>\n-- Run on npe2<br>\n-- Add output types: binary/connected component<br>\n- 0.0.1<br>\n-- Run on npe1<br>\n\n\n----------------------------------\n\nThis [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.\n\n<!--\nDon't miss the full getting started guide to set up your new package:\nhttps://github.com/napari/cookiecutter-napari-plugin#getting-started\n\nand review the napari docs for plugin developers:\nhttps://napari.org/docs/plugins/index.html\n-->\n\n## Installation\n\nYou can install `napari-labels-overlap` via [pip]:\n\n    pip install napari-labels-overlap\n\n\n\nTo install latest development version :\n\n    pip install git+https://github.com/chili-chiu/napari-labels-overlap.git\n\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [BSD-3] license,\n\"napari-labels-overlap\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[file an issue]: https://github.com/chili-chiu/napari-labels-overlap/issues\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/chili-chiu/napari-labels-overlap","download_url":null,"author":"Chi-Li Chiu","author_email":"cchiu@chanzuckerberg.com","maintainer":null,"maintainer_email":null,"license":"BSD-3-Clause","classifier":["Development Status :: 2 - Pre-Alpha","Intended Audience :: Developers","Framework :: napari","Topic :: Software Development :: Testing","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3.7","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Operating System :: OS Independent","License :: OSI Approved :: BSD License"],"requires_dist":["scikit-image"],"requires_python":">=3.7","requires_external":null,"project_url":["Bug Tracker, https://github.com/chili-chiu/napari-labels-overlap/issues","Documentation, https://github.com/chili-chiu/napari-labels-overlap#README.md","Source Code, https://github.com/chili-chiu/napari-labels-overlap","User Support, https://github.com/chili-chiu/napari-labels-overlap/issues"],"provides_extra":null,"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}