{"name":"napari-itk-io","display_name":"napari-itk-io","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-itk-io.get_reader","title":"Open data with napari-itk-io","python_name":"napari_itk_io._reader:napari_get_reader","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-itk-io.write_multiple","title":"Save multi-layer data with napari-itk-io","python_name":"napari_itk_io._writer:write_multiple","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-itk-io.write_single","title":"Save layer data with napari-itk-io","python_name":"napari_itk_io._writer:write_single","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":[{"command":"napari-itk-io.get_reader","filename_patterns":["*"],"accepts_directories":true}],"writers":[{"command":"napari-itk-io.write_multiple","layer_types":["image*","labels*"],"filename_extensions":[],"display_name":""},{"command":"napari-itk-io.write_single","layer_types":["image","labels"],"filename_extensions":[".nii"],"display_name":""}],"widgets":null,"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-itk-io","version":"0.3.0","dynamic":null,"platform":null,"supported_platform":null,"summary":"File IO with itk for napari","description":"# napari-itk-io\n\n[![License](https://img.shields.io/pypi/l/napari-itk-io.svg?color=green)](https://github.com/InsightSoftwareConsortium/napari-itk-io/raw/master/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-itk-io.svg?color=green)](https://pypi.org/project/napari-itk-io)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-itk-io.svg?color=green)](https://python.org)\n[![tests](https://github.com/InsightSoftwareConsortium/napari-itk-io/workflows/tests/badge.svg)](https://github.com/InsightSoftwareConsortium/napari-itk-io/actions)\n[![codecov](https://codecov.io/gh/InsightSoftwareConsortium/napari-itk-io/branch/master/graph/badge.svg)](https://codecov.io/gh/InsightSoftwareConsortium/napari-itk-io)\n\nFile IO with [itk](https://itk.org) for [napari](https://napari.org).\n\nImage metadata, e.g. the pixel spacing, origin, and metadata tags, are preserved and passed into napari.\n\nSupported image file formats:\n\n- [BioRad](http://www.bio-rad.com/)\n- [BMP](https://en.wikipedia.org/wiki/BMP_file_format)\n- [DICOM](http://dicom.nema.org/)\n- [DICOM Series](http://dicom.nema.org/)\n- [ITK HDF5](https://support.hdfgroup.org/HDF5/)\n- [JPEG](https://en.wikipedia.org/wiki/JPEG_File_Interchange_Format)\n- [GE4,GE5,GEAdw](http://www3.gehealthcare.com)\n- [Gipl (Guys Image Processing Lab)](https://www.ncbi.nlm.nih.gov/pubmed/12956259)\n- [LSM](http://www.openwetware.org/wiki/Dissecting_LSM_files)\n- [MetaImage](https://itk.org/Wiki/ITK/MetaIO/Documentation)\n- [MINC 2.0](https://en.wikibooks.org/wiki/MINC/SoftwareDevelopment/MINC2.0_File_Format_Reference)\n- [MGH](https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MghFormat)\n- [MRC](http://www.ccpem.ac.uk/mrc_format/mrc_format.php)\n- [NifTi](https://nifti.nimh.nih.gov/nifti-1)\n- [NRRD](http://teem.sourceforge.net/nrrd/format.html)\n- [Portable Network Graphics (PNG)](https://en.wikipedia.org/wiki/Portable_Network_Graphics)\n- [Tagged Image File Format (TIFF)](https://en.wikipedia.org/wiki/TIFF)\n- [VTK legacy file format for images](http://www.vtk.org/VTK/img/file-formats.pdf)\n\nFor DICOM Series, select the folder containing the series with *File -> Open\nFolder...*. The first series will be selected and sorted spatially.\n\n## Installation\n\nYou can install `napari-itk-io` via [pip]:\n\n    pip install napari-itk-io\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\nFollow the [itk contributing\nguidelines](https://github.com/InsightSoftwareConsortium/ITK/blob/master/CONTRIBUTING.md)\nand the [itk code of\nconduct](https://github.com/InsightSoftwareConsortium/ITK/blob/master/CODE_OF_CONDUCT.md).\n\n## License\n\nDistributed under the terms of the [Apache Software License 2.0] license,\n\"napari-itk-io\" is free and open source software.\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n[file an issue]: https://github.com/InsightSoftwareConsortium/napari-itk-io/issues\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/InsightSoftwareConsortium/napari-itk-io","download_url":null,"author":"Matt McCormick","author_email":"matt.mccormick@kitware.com","maintainer":null,"maintainer_email":null,"license":"Apache-2.0","classifier":["Development Status :: 4 - Beta","Intended Audience :: Developers","Framework :: napari","Topic :: Software Development :: Testing","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Operating System :: OS Independent","License :: OSI Approved :: Apache Software License"],"requires_dist":["numpy","napari-plugin-engine (>=0.2.0)","itk-io (>=5.2.0)","itk-napari-conversion"],"requires_python":">=3.8","requires_external":null,"project_url":null,"provides_extra":null,"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}