{"name":"napari-boxmanager","display_name":"Box Manager","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-boxmanager.get_reader","title":"Open data with Box Manager","python_name":"box_manager._reader:napari_get_reader","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-boxmanager.get_writer","title":"Save image data with Box Manager","python_name":"box_manager._writer:napari_get_writer","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-boxmanager.select_metric","title":"Select box metrics","python_name":"box_manager._qt.SelectMetric:SelectMetricWidget","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-boxmanager.organize_box","title":"Organize box files to the respective mrc","python_name":"box_manager._qt.OrganizeBox:OrganizeBoxWidget","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-boxmanager.bandpass_filter","title":"Filter image layer","python_name":"box_manager._qt.FilterImage:FilterImageWidget","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-boxmanager.organize_layer","title":"Add new layers with default values","python_name":"box_manager._qt.OrganizeLayer:OrganizeLayerWidget","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":[{"command":"napari-boxmanager.get_reader","filename_patterns":["*.tloc","*.temb","*.tmap","*.cbox","*.box","*.star","*.mrc","*.mrcs","*.st","*.coords","*.rec","*.cs","*.tif","*.tiff","*.mrci"],"accepts_directories":true}],"writers":[{"command":"napari-boxmanager.get_writer","layer_types":["points*","image*","shapes*"],"filename_extensions":[".tloc",".temb",".tmap",".cbox",".box",".star",".mrc",".mrcs",".st",".coords",".rec",".mrci"],"display_name":""}],"widgets":[{"command":"napari-boxmanager.select_metric","display_name":"boxmanager","autogenerate":false},{"command":"napari-boxmanager.organize_layer","display_name":"organize_layer","autogenerate":false},{"command":"napari-boxmanager.bandpass_filter","display_name":"bandpass_filter","autogenerate":false},{"command":"napari-boxmanager.organize_box","display_name":"match_mics","autogenerate":false}],"sample_data":[],"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-boxmanager","version":"0.4.5","dynamic":null,"platform":null,"supported_platform":null,"summary":"Particle selection tool for cryo-em","description":"# napari-boxmanager\n\n[![License Mozilla Public License 2.0](https://img.shields.io/pypi/l/napari-boxmanager.svg?color=green)](https://github.com/mstabrin/napari-boxmanager/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-boxmanager.svg?color=green)](https://pypi.org/project/napari-boxmanager)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-boxmanager.svg?color=green)](https://python.org)\n[![tests](https://github.com/mstabrin/napari-boxmanager/workflows/tests/badge.svg)](https://github.com/mstabrin/napari-boxmanager/actions)\n[![codecov](https://codecov.io/gh/mstabrin/napari-boxmanager/branch/main/graph/badge.svg)](https://codecov.io/gh/mstabrin/napari-boxmanager)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-boxmanager)](https://napari-hub.org/plugins/napari-boxmanager)\n\nParticle selection tool for cryo-em\n\n----------------------------------\n\nThis [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.\n\n<!--\nDon't miss the full getting started guide to set up your new package:\nhttps://github.com/napari/cookiecutter-napari-plugin#getting-started\n\nand review the napari docs for plugin developers:\nhttps://napari.org/plugins/index.html\n-->\n\n## Installation\n\nHere is how to install napari together with the boxmanager plugin:\n\n    mamba env create -n napari -f https://raw.githubusercontent.com/MPI-Dortmund/napari-boxmanager/main/conda_env.yml\n    conda activate napari\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [Mozilla Public License 2.0] license,\n\"napari-boxmanager\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/MPI-Dortmund/napari-boxmanager","download_url":null,"author":"Markus Stabrin","author_email":"markus.stabrin@mpi-dortmund.mpg.de","maintainer":null,"maintainer_email":null,"license":"MPL-2.0","classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Developers","License :: OSI Approved :: Mozilla Public License 2.0 (MPL 2.0)","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.10","Topic :: Software Development :: Testing"],"requires_dist":["matplotlib","mrcfile","numpy <=1.23.5","pystardb >=0.4.2","napari >=0.4.17","pandas","pyqt5","scipy","tifffile","tqdm","mrcfile ; extra == 'testing'","napari ; extra == 'testing'","pyqt5 ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'","pytest-qt ; extra == 'testing'","tox ; extra == 'testing'"],"requires_python":">=3.10","requires_external":null,"project_url":null,"provides_extra":["testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}