{"name":"napari-bio-sample-data","display_name":"napari bio sample data","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-bio-sample-data.tomo_data","title":"Load data","python_name":"napari_bio_sample_data._sample_data:tomo_data","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-bio-sample-data.skin_data","title":"Load data","python_name":"napari_bio_sample_data._sample_data:skin_data","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-bio-sample-data.nuclei_data","title":"Load data","python_name":"napari_bio_sample_data._sample_data:nuclei_data","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-bio-sample-data.timelapse_data","title":"Load data","python_name":"napari_bio_sample_data._sample_data:timelapse_data","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-bio-sample-data.large_data","title":"Load data","python_name":"napari_bio_sample_data._sample_data:large_data","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":null,"sample_data":[{"command":"napari-bio-sample-data.tomo_data","key":"unique_id.0","display_name":"3D cryo-tomography"},{"command":"napari-bio-sample-data.skin_data","key":"unique_id.1","display_name":"2D skin HE"},{"command":"napari-bio-sample-data.nuclei_data","key":"unique_id.2","display_name":"3D nuclei"},{"command":"napari-bio-sample-data.timelapse_data","key":"unique_id.3","display_name":"2D cell timelapse"},{"command":"napari-bio-sample-data.large_data","key":"unique_id.4","display_name":"large multi-resolution 3D EM"}],"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-bio-sample-data","version":"0.0.4","dynamic":null,"platform":null,"supported_platform":null,"summary":"a sample data plugin for bio-related demos","description":"# napari-bio-sample-data\n\n[![License](https://img.shields.io/pypi/l/napari-bio-sample-data.svg?color=green)](https://github.com/chili-chiu/napari-bio-sample-data/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-bio-sample-data.svg?color=green)](https://pypi.org/project/napari-bio-sample-data)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-bio-sample-data.svg?color=green)](https://python.org)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-bio-sample-data)](https://napari-hub.org/plugins/napari-bio-sample-data)\n\na sample data plugin for bio-related demos\n\n----------------------------------\nThis plugin contains 5 sample datasets with additional napari layer types:\n\n(1) 3D EM dataset (image + points + vectors)  \nImage credit: Alister Burt  \nThe [original data](https://github.com/alisterburt/napari-cryo-et-demo) is down-sampled to have smaller file size.  \n<img width=\"300\" alt=\"image\" src=\"https://user-images.githubusercontent.com/89602983/178569428-7daa2eb8-a3ff-4c0e-8e5f-4f615a55684f.png\">\n\n(2) 2D skin RGB dataset (image + shape)  \nImage credit: skimage.data.skin  \n<img width=\"300\" alt=\"image\" src=\"https://user-images.githubusercontent.com/89602983/178569580-bf77e55c-71cc-4883-9fe5-ed94e05f2a29.png\">\n  \n(3) 3D nuclei dataset (image + label + surface)  \nImage credit: skimage.data.cells3d  \n<img width=\"300\" alt=\"image\" src=\"https://user-images.githubusercontent.com/89602983/178569701-7c9b1cc3-c1c3-4e54-8ca0-fb2b530f858e.png\">\n\n(4) 2D timelapse dataset (image + points + tracks)  \nImage credit: [Cell Tracking Challenge](http://celltrackingchallenge.net/2d-datasets/)  \nThe original data is cropped to have smaller file size.  \n<img width=\"300\" alt=\"image\" src=\"https://user-images.githubusercontent.com/89602983/178569846-b995d1cb-c1ec-4363-ba1a-71243ffea4e0.png\">\n\n(5) large multi-resolution 3D EM dataset  \nImage credit: [Janelia Open Organelle](https://openorganelle.janelia.org/datasets/jrc_hela-1)   \nThis plugin only accesses 2 lower resolution levels.  \n<img width=\"300\" alt=\"image\" src=\"https://user-images.githubusercontent.com/89602983/178570136-6f59ba3c-d687-446c-9f5e-1df567a62948.png\">\n\nDatasets (1)-(4) are stored locally.   \nDataset (5) is downloaded and temporarily stored on RAM when accessed.    \n\nThis [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.\n\n<!--\nDon't miss the full getting started guide to set up your new package:\nhttps://github.com/napari/cookiecutter-napari-plugin#getting-started\n\nand review the napari docs for plugin developers:\nhttps://napari.org/plugins/index.html\n-->\n\n## Installation\n\nYou can install `napari-bio-sample-data` via [pip]:\n\n    pip install napari-bio-sample-data\n\nTo install latest development version :\n\n    pip install git+https://github.com/chili-chiu/napari-bio-sample-data.git\n\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [BSD-3] license,\n\"napari-bio-sample-data\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[file an issue]: https://github.com/chili-chiu/napari-bio-sample-data/issues\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/chili-chiu/napari-bio-sample-data","download_url":null,"author":"Chi-Li Chiu","author_email":"cchiu@chanzuckerberg.com","maintainer":null,"maintainer_email":null,"license":"BSD-3-Clause","classifier":["Development Status :: 2 - Pre-Alpha","Intended Audience :: Developers","Framework :: napari","Topic :: Software Development :: Testing","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Operating System :: OS Independent","License :: OSI Approved :: BSD License"],"requires_dist":["numpy","fsspec","zarr (>=2.12.0)","dask","s3fs","tox ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'"],"requires_python":">=3.8","requires_external":null,"project_url":["Bug Tracker, https://github.com/chili-chiu/napari-bio-sample-data/issues","Documentation, https://github.com/chili-chiu/napari-bio-sample-data#README.md","Source Code, https://github.com/chili-chiu/napari-bio-sample-data","User Support, https://github.com/chili-chiu/napari-bio-sample-data/issues"],"provides_extra":["testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}