{"name":"napari-bfio","display_name":"Bfio","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-bfio.get_reader","title":"Open data with Bfio","python_name":"napari_bfio._reader:napari_get_reader","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-bfio.write_single_image","title":"Save image data with Bfio","python_name":"napari_bfio._writer:write_single_image","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":[{"command":"napari-bfio.get_reader","filename_patterns":["*.ome.tiff","*.ome.tif","*.ome.zarr","*.tiff","*.1sc","*.2fl","*.acff","*.afi","*.afm","*.aim","*.al3d","*.ali","*.am","*.amiramesh","*.apl","*.arf","*.avi","*.bif","*.bin","*.bip","*.bmp","*.btf","*.c01","*.cfg","*.ch5","*.cif","*.cr2","*.crw","*.cxd","*.dat","*.db","*.dcm","*.dib","*.dicom","*.dm2","*.dm3","*.dm4","*.dti","*.dv","*.eps","*.epsi","*.exp","*.fdf","*.fff","*.ffr","*.fits","*.flex","*.fli","*.frm","*.gel","*.gif","*.grey","*.h5","*.hdf","*.hdr","*.hed","*.his","*.htd","*.hx","*.i2i","*.ics","*.ids","*.im3","*.img","*.img","*.ims","*.inr","*.ipl","*.ipm","*.ipw","*.j2k","*.jp2","*.jpeg","*.jpf","*.jpg","*.jpk","*.jpx","*.klb","*.l2d","*.labels","*.lei","*.lif","*.liff","*.lim","*.lms","*.lof","*.lsm","*.map","*.mdb","*.mea","*.mnc","*.mng","*.mod","*.mov","*.mrc","*.mrcs","*.mrw","*.msr","*.mtb","*.mvd2","*.naf","*.nd","*.nd2","*.ndpi","*.ndpis","*.nef","*.nhdr","*.nii","*.nii.gz","*.nrrd","*.obf","*.obsep","*.oib","*.oif","*.oir","*.omp2info","*.par","*.pbm","*.pcoraw","*.pcx","*.pds","*.pgm","*.pic","*.pict","*.png","*.pnl","*.ppm","*.pr3","*.ps","*.psd","*.qptiff","*.r3d","*.raw","*.rcpnl","*.rec","*.res","*.scn","*.sdt","*.seq","*.sif","*.sld","*.sldy","*.sm2","*.sm3","*.spc","*.spe","*.spi","*.st","*.stk","*.stp","*.svs","*.sxm","*.tf2","*.tf8","*.tfr","*.tga","*.tif","*.tif","*.tiff","*.tnb","*.top","*.txt","*.v","*.vff","*.vms","*.vsi","*.vws","*.wat","*.wpi","*.xdce","*.xlef","*.xqd","*.xqf","*.xv","*.xys","*.zfp","*.zfr","*.zvi"],"accepts_directories":true}],"writers":[{"command":"napari-bfio.write_single_image","layer_types":["image"],"filename_extensions":[".ome.tiff",".ome.tif",".ome.zarr"],"display_name":""},{"command":"napari-bfio.write_single_image","layer_types":["labels"],"filename_extensions":[".ome.tiff",".ome.tif",".ome.zarr"],"display_name":""}],"widgets":null,"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-bfio","version":"0.0.4","dynamic":null,"platform":null,"supported_platform":null,"summary":"A plugin to read and write images using bfio within napari","description":"# napari-bfio\n\n[![License MIT](https://img.shields.io/pypi/l/napari-bfio.svg?color=green)](https://github.com/PolusAI/napari-bfio/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-bfio.svg?color=green)](https://pypi.org/project/napari-bfio)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-bfio.svg?color=green)](https://python.org)\n[![tests](https://github.com/PolusAI/napari-bfio/workflows/tests/badge.svg)](https://github.com/PolusAI/napari-bfio/actions)\n[![codecov](https://codecov.io/gh/PolusAI/napari-bfio/branch/main/graph/badge.svg)](https://codecov.io/gh/PolusAI/napari-bfio)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-bfio)](https://napari-hub.org/plugins/napari-bfio)\n\nA plugin to read and write images using bfio within napari\n\n----------------------------------\n\nThis [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.\n\n<!--\nDon't miss the full getting started guide to set up your new package:\nhttps://github.com/napari/cookiecutter-napari-plugin#getting-started\n\nand review the napari docs for plugin developers:\nhttps://napari.org/stable/plugins/index.html\n-->\n\n## Installation\n\nYou can install `napari-bfio` via [pip]:\n\n    pip install napari-bfio\n\n`napari-bfio` depends on `bfio` package to read/write the data. By default, `bfio` package and the core dependencies (numpy, tifffile, imagecodecs, scyjava) are installed during the installation process of `napari-bfio`.\n\nTo install latest development version :\n\n    pip install git+https://github.com/PolusAI/napari-bfio.git\n\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [MIT] license,\n\"napari-bfio\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[file an issue]: https://github.com/PolusAI/napari-bfio/issues\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/PolusAI/napari-bfio","download_url":null,"author":"Sameeul B Samee","author_email":"sameeul.samee@nih.gov","maintainer":null,"maintainer_email":null,"license":"MIT","classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Developers","License :: OSI Approved :: MIT License","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Topic :: Scientific/Engineering :: Image Processing"],"requires_dist":["numpy","bfio >=2.3.1","tox ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'"],"requires_python":">=3.8","requires_external":null,"project_url":["Bug Tracker, https://github.com/PolusAI/napari-bfio/issues","Documentation, https://github.com/PolusAI/napari-bfio#README.md","Source Code, https://github.com/PolusAI/napari-bfio","User Support, https://github.com/PolusAI/napari-bfio/issues"],"provides_extra":["testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}