{"name":"napari-J","display_name":"napari-J","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-J.Connection","title":"Connection","python_name":"napari_j.connection:Connection","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-J.Image","title":"Image","python_name":"napari_j.image:Image","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-J.Points","title":"Points","python_name":"napari_j.points:Points","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"napari-J.Connection","display_name":"Connection","autogenerate":false},{"command":"napari-J.Image","display_name":"Image","autogenerate":false},{"command":"napari-J.Points","display_name":"Points","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-J","version":"0.3","dynamic":null,"platform":null,"supported_platform":null,"summary":"A plugin to exchange data with FIJI and to use FIJI image analysis from napari","description":"# napari-J\n\n[![License](https://img.shields.io/pypi/l/napari-J.svg?color=green)](https://github.com/MontpellierRessourcesImagerie/napari-J/raw/master/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-J.svg?color=green)](https://pypi.org/project/napari-J)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-J.svg?color=green)](https://python.org)\n[![tests](https://github.com/MontpellierRessourcesImagerie/napari-J/workflows/tests/badge.svg)](https://github.com/MontpellierRessourcesImagerie/napari-J/actions)\n[![codecov](https://codecov.io/gh/MontpellierRessourcesImagerie/napari-J/branch/master/graph/badge.svg)](https://codecov.io/gh/MontpellierRessourcesImagerie/napari-J)\n\nA plugin to exchange data with FIJI and to use FIJI image analysis from napari.\nCurrent features are:\n\n * get the active image from FIJI\n * send a screenshot to FIJI\n * get a set of points from the FIJI results table\n * filter the points in napari\n * send the filtered points back to FIJI\n \nKnown problems:\n\n* Crashes on linux  when the file-dialog is opened. Workaround: Set the option ``Use JFileChooser to open/save`` from the ``Edit>Options>Input/Output`` menu.\n* 03.05.2022 - Currently you need to have the range of the quality values for point between 0 and 255, in the new version they can have any range, but we are waiting for the bug in napari 0.4.15 to be fixed to release this. \n\n----------------------------------\n\nThis [napari] plugin was generated with [Cookiecutter] using with [@napari]'s [cookiecutter-napari-plugin] template.\n\n<!--\nDon't miss the full getting started guide to set up your new package:\nhttps://github.com/napari/cookiecutter-napari-plugin#getting-started\n\nand review the napari docs for plugin developers:\nhttps://napari.org/docs/plugins/index.html\n-->\n\n## Installation\n\nYou can install `napari-J` via [pip]:\n\n    pip install napari-J\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [MIT] license,\n\"napari-J\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue](https://github.com/MontpellierRessourcesImagerie/napari-J/issues) along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n[file an issue]: https://github.com/MontpellierRessourcesImagerie/napari-J/issues\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/MontpellierRessourcesImagerie/napari-J","download_url":null,"author":"Volker Baecker","author_email":"volker.baecker@mri.cnrs.fr","maintainer":null,"maintainer_email":null,"license":"MIT","classifier":["Development Status :: 4 - Beta","Intended Audience :: Science/Research","Topic :: Scientific/Engineering","License :: OSI Approved :: MIT License","Operating System :: OS Independent","Programming Language :: Python :: 3.7","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Framework :: napari"],"requires_dist":["JPype1 (>=1.2.1)","matplotlib","imageio-ffmpeg","matplotlib ; extra == 'testing'","imageio-ffmpeg ; extra == 'testing'","python-matplotlib-qt5 ; extra == 'testing'","pytest-qt ; extra == 'testing'"],"requires_python":">=3.7","requires_external":null,"project_url":["Bug Tracker, https://github.com/MontpellierRessourcesImagerie/napari-J/issues","Documentation, https://github.com/MontpellierRessourcesImagerie/napari-J#README.md","Source Code, https://github.com/MontpellierRessourcesImagerie/napari-J","User Support, https://github.com/MontpellierRessourcesImagerie/napari-J/issues"],"provides_extra":["testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":true}