{"name":"napari-EMD","display_name":"EMD File Viewer","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-EMD.get_reader","title":"Open data with EMD File Viewer","python_name":"napari_emd._reader:napari_get_reader","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-EMD.load_widget","title":"Display metadata for EMD file","python_name":"napari_emd._widget:EMDWidget","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":[{"command":"napari-EMD.get_reader","filename_patterns":["*.emd"],"accepts_directories":false}],"writers":null,"widgets":[{"command":"napari-EMD.load_widget","display_name":"EMD Reader Widget","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-EMD","version":"0.1.1","dynamic":null,"platform":null,"supported_platform":null,"summary":"A simple plugin to view .emd files in napari (Velox files)","description":"# napari-EMD\n\n[![License BSD-3](https://img.shields.io/pypi/l/napari-EMD.svg?color=green)](https://github.com/NickiShaw/napari-EMD/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-EMD.svg?color=green)](https://pypi.org/project/napari-EMD)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-EMD.svg?color=green)](https://python.org)\n[![tests](https://github.com/NickiShaw/napari-EMD/workflows/tests/badge.svg)](https://github.com/NickiShaw/napari-EMD/actions)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-EMD)](https://napari-hub.org/plugins/napari-EMD)\n\nA simple plugin to view .emd files in napari (i.e. Velox files). Allows users to track metadata as it changes over the course of a video/stack, developed for analysis of in-situ microscopy data, where users may be changing magnification, focus, etc. during aquisition.\n\n----------------------------------\n\nThis [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.\n\n\n\n## Installation\n\nYou can install `napari-EMD` via [pip]:\n\n `pip install napari-EMD`\n\nYou can install napari and access the plugin through the GUI. [Reccomended install command for napari](https://napari.org/stable/tutorials/fundamentals/installation.html):\n\n `python -m pip install \"napari[all]\"`\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [BSD-3] license,\n\"napari-EMD\" is free and open source software\n\n## Issues and Requests\n\n> **Warning: The metadata viewer does not work in the current [Napari bundle](https://napari.org/stable/tutorials/fundamentals/installation.html#install-as-a-bundled-app) version (August 2023). Use the [python package version](https://napari.org/stable/tutorials/fundamentals/installation.html#install-as-python-package-recommended) of Napari for this feature.**\n\nIf you encounter any problems or would like any functionality added, please [file an issue](https://docs.github.com/en/issues/tracking-your-work-with-issues/creating-an-issue) along with a detailed description.\n\nCurrent maintainer(s): [Nicki Shaw](https://docs.github.com/en/issues/tracking-your-work-with-issues/creating-an-issue)\n\n## Preview\n\nImages A and B show different frames in the same image stack, the metadata plugin on the right shows the changing focus value.\n![NapariEMD screenshots](Images/napariEMD_screenshots.jpg)\n\n## To Do\n\n- Attatch last-opened information, so the widget does not reset when frames are changed and open toggle options are open remain.\n- Add a search bar for navigating metadata.\n- Output metadata as file option.\n- Add note to change order of open files to replacee active metadata view.\n- Make Singleframe note update automatically on change of file order.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/NickiShaw/napari-EMD.git","download_url":null,"author":"Nicolette Shaw","author_email":"shaw.nicki@gmail.com","maintainer":null,"maintainer_email":null,"license":"BSD-3-Clause","classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Developers","License :: OSI Approved :: BSD License","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Topic :: Scientific/Engineering :: Image Processing"],"requires_dist":["numpy","h5py","magicgui","ujson","tox ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'","pytest-qt ; extra == 'testing'","napari ; extra == 'testing'","pyqt5 ; extra == 'testing'"],"requires_python":">=3.8","requires_external":null,"project_url":null,"provides_extra":["testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}